PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 207aa    MW: 22458.5 Da    PI: 4.5725
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016468genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.2e-42141131100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+l+rkC +dC++apyfpae+ +kf  vhk+FGasnv kll+++ +++reda+s+l yeAear+rdPvyG+vg i+ lq q+e+l++el++++
  DCAR_016468  14 PCAACKFLKRKCLPDCIFAPYFPAEELQKFISVHKIFGASNVAKLLNEVLPHQREDAASTLSYEAEARLRDPVYGCVGAISILQLQVERLQKELDEAN 111
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  +e
  DCAR_016468 112 AE 113
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.18213114IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4114111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAASFSVPRY DYTPCAACKF LKRKCLPDCI FAPYFPAEEL QKFISVHKIF GASNVAKLLN  60
EVLPHQREDA ASTLSYEAEA RLRDPVYGCV GAISILQLQV ERLQKELDEA NAELVSYHCC  120
YHPNMSGTIA TLPAPSAVPI NPVCDYAQIP PQIRPVDLIN TGEAEVCSYY QTPSSVTFPP  180
NDDTNVPDQG GAAGQGLLFN DSASLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1483971e-121FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476856.13e-63PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476857.13e-63PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_006476858.13e-63PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_015385245.13e-63PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML44e-57LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLB9IEW95e-63B9IEW9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s09370.12e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-58LBD family protein